PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4AL_7800B74E3.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 306aa    MW: 33579.7 Da    PI: 7.0915
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4AL_7800B74E3.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.98.2e-171461148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd +lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Traes_4AL_7800B74E3.2 14 KGPWTPEEDIILVSYIQEHGPGNWRSVPVSTGLMRCSKSCRLRWTNYL 61
                           79********************************************97 PP

2Myb_DNA-binding43.48.1e-1467113148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                            rg++T  E+  +v++  +lG+ +W++Ia++++ +Rt++++k++w+++l
  Traes_4AL_7800B74E3.2  67 RGNFTSHEEGVIVHLQSLLGNSRWAAIASYLP-RRTDNDIKNYWNTHL 113
                            89******************************.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-22564IPR009057Homeodomain-like
PROSITE profilePS5129422.093965IPR017930Myb domain
SuperFamilySSF466892.64E-2711109IPR009057Homeodomain-like
SMARTSM007173.1E-121363IPR001005SANT/Myb domain
PfamPF002492.4E-151461IPR001005SANT/Myb domain
CDDcd001672.09E-111661No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2165117IPR009057Homeodomain-like
PROSITE profilePS5129416.79666117IPR017930Myb domain
SMARTSM007171.8E-1166115IPR001005SANT/Myb domain
PfamPF002491.7E-1167113IPR001005SANT/Myb domain
CDDcd001675.92E-1069113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRPPCCDKL GVKKGPWTPE EDIILVSYIQ EHGPGNWRSV PVSTGLMRCS KSCRLRWTNY  60
LRTGIKRGNF TSHEEGVIVH LQSLLGNSRW AAIASYLPRR TDNDIKNYWN THLKKKLRKQ  120
QAMGATFAPP ASSSPGTAGD NFDHHNHHDM VSRADGYGAG QAYMNKEVSQ LIAGRGHSPF  180
ADAAPEACSS SSYASSVDNI SKLLGGFMKS SPPPPPPPPH NNYDADDVKP LLPLDSMSGT  240
GSAELSFTAS VQQPALMGGR VGYEYDDETK QKQQHQAPLS SIEKWLFDEA ADLELSDECY  300
SVPMLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-22141174105MYB PROTO-ONCOGENE PROTEIN
1mse_C6e-22141174105C-Myb DNA-Binding Domain
1msf_C6e-22141174105C-Myb DNA-Binding Domain
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3560900.0AK356090.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1029P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978476.11e-111PREDICTED: transcription factor MYB30-like
SwissprotP813922e-80MYB06_ANTMA; Myb-related protein 306
TrEMBLW5DQH90.0W5DQH9_WHEAT; Uncharacterized protein
STRINGMLOC_72230.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22938296
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.13e-78myb domain protein 60
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]